rs233209040 SNP Detail

Summary

• ID
  rs233209040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53858485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAGGGCAG CCATTTCTGA GGCAAAGGGC
  AAGCATGCCC TCCTCCGCAC GCTCACCTCT GTGTGCTTCG TACAGTTTTC TCTCATTTTT
  TTGTTCCTTT TGTTTTGTTG TTGTTGTTGG TTTGCCTTCA AAACAAAATT TTCTAAGTTC
  Y
  GTGTGTTTAC TTATAAGTAA ACAACTCAGC TGCTTTTCTG TCCTCTGTGT CAACAAGAAA
  ATCCCCAGGT TCTGCGTTTA GCTTGAATAA TTACCAAACT GTTTGTAATT ACAATACGAG
  GATGTGACCT CGGAGCATTT TTTTTTTGTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324044492	CHEV_12_54912689	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233209040					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53858485 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	1516 bp proximal
Rr267638	regulatory region 267638	317 bp proximal