rs233216954 SNP Detail

Summary

• ID
  rs233216954
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28946104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTGGGAG ATGGCTCCAT
  CAGTAAGGAA GACCTGACTT CAATCCTTGG ACCCCACATT AAAAAAAAAA AGAGCCCAAA
  GTAGATCTAT TCTTATAATC TCAGAGCTAG GAATGTGGGG CTCATTGGTA CCAGCCTAGC
  CTACTTGGTA AAGGGTCCTC TAACTCCCAC AAATATAGGT ACACACACAC ACACACACCC
  M
  CAAAGAAACA TCGGGAACAG TGAGGTGGCT AAGCAGGTGA AGGGCGCTCG CTACCAAGCT
  CCTGCAGGCT GCGCTGACGT GCATACCAGG GCTCAAGTAG ATCCATCACC AGGAACTCGA
  GGCCACCTTG GTCTACATGT CAAGATCCTG CCTCCCAGAG AGAAAGAGCG CGGGAGGGGG
  AGAAGGAGGG GGAGGAAGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370877950	MGP_WTSI_7_30031698	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233216954					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370877950	MGP_WTSI_7_30031698	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28946104 () rs orientation: forward

Symbol	Name	Function Class
2200002D01Rik	RIKEN cDNA 2200002D01 gene	842 bp downstream
Cpgi18753	CpG island 18753	556 bp proximal
Gm73451	predicted gene, 73451	936 bp upstream
Rr644522	regulatory region 644522	1363 bp distal
Rr644523	regulatory region 644523	446 bp proximal
Rr644524	regulatory region 644524	865 bp proximal
Rr644525	regulatory region 644525	1777 bp proximal
Tssr65617	transcription start site region 65617	929 bp downstream
Tssr65618	transcription start site region 65618	956 bp upstream
Tssr71635	transcription start site region 71635	443 bp downstream
Tssr71636	transcription start site region 71636	1047 bp downstream
Tssr71637	transcription start site region 71637	1247 bp downstream
Tssr71638	transcription start site region 71638	1265 bp downstream
Tssr71639	transcription start site region 71639	1696 bp downstream
Tssr71640	transcription start site region 71640	1778 bp downstream
Tssr71641	transcription start site region 71641	1832 bp downstream
Yif1b	Yip1 interacting factor homolog B (S. cerevisiae)	within coordinates