rs233218417 SNP Detail

Summary

• ID
  rs233218417
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100462673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGGGAAAT CACTGGGGTC CATGGCTGGG
  TATGGGCTGC AGATCGGAAG AGGGGGCAGT AGAGGTGGTC TTAGCCTGAA TTTCTTATGT
  CGGCTGTGGG ACACACCCCG TCCGTCATCC ACTTGGATTT CTCATTAGCA GCCGCCCCCC
  M
  CAGCCGATAG GCATTTCCAC AGGCTTCAGG CTCAATGTCC ACTCCCCCCC CAATACAGCG
  CCCTCTGTGG GGAGTGGCGT TCCCTGCCCT GGCCCCGTGC CCACACTCGC CAGGCAGTTG
  GTCTCTAACC CGCCCGACAC CCCCCACGGA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325907568	CHEV_X_98614406	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233218417					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100462673 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22868	CpG island 22868	75 bp proximal
Cpgi22869	CpG island 22869	642 bp proximal
Rr692835	regulatory region 692835	617 bp proximal
Rr692836	regulatory region 692836	721 bp proximal
Tssr163885	transcription start site region 163885	709 bp downstream
Tssr163886	transcription start site region 163886	721 bp downstream
Tssr163887	transcription start site region 163887	1139 bp downstream
Tssr163888	transcription start site region 163888	1281 bp downstream
Zmym3	zinc finger, MYM-type 3	within coordinates