rs233221740 SNP Detail

Summary

• ID
  rs233221740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94902677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGTTCC ACCCGCAGGT
  TGTAGACCTT TTGTTTGGCT TTCTCCTTCC CTTGGGCTCC AGGTAGCTTG GAACTCACCT
  GCCTTTCCTT TTTCCAGAGA AAGGTCAGAG GTCCCTAATG GTCCTCCAGG AACTGGAAGC
  TGTTGGGGAA GGGAGTGGTC TGTTGACCAG GGAGCCCAGA GGTTGTCCAA GGGGACAGGT
  Y
  CATTTGCATC CTTGTGTAGT TAACACTCCT GAGTAAGAGT GTGAGCCAAA GAGGGAAGAG
  AGGTGAGGTG GGGATTTAAT TTTCCTAGGG TGTGTTTTAG GGAGGAGAGA GTTCAGTGAC
  AGGGGCAGGT GACCCGAATA CTATGCATCC ATGGAGTTTT ACATGGGACA GAGCGGGAAG
  GCTCCCTGAC AGTTATGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384337438	MGP_WTSI_11_94873165	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233221740					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384337438	MGP_WTSI_11_94873165	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94902677 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3571	CpG island 3571	1190 bp distal
Gm36385	predicted gene, 36385	1600 bp upstream
Gm72634	predicted gene, 72634	within coordinates
Rr250	regulatory region 250	471 bp proximal
Rr454924	regulatory region 454924	1962 bp distal
Rr454925	regulatory region 454925	1611 bp distal
Rr454926	regulatory region 454926	1110 bp distal
Rr454927	regulatory region 454927	within coordinates
Rr454928	regulatory region 454928	37 bp proximal
Samd14	sterile alpha motif domain containing 14	within coordinates
Tssr104329	transcription start site region 104329	1961 bp downstream
Tssr104330	transcription start site region 104330	1932 bp downstream
Tssr104331	transcription start site region 104331	1904 bp downstream
Tssr104332	transcription start site region 104332	1888 bp downstream
Tssr104333	transcription start site region 104333	1822 bp downstream
Tssr104334	transcription start site region 104334	1765 bp downstream
Tssr104335	transcription start site region 104335	1736 bp downstream
Tssr104336	transcription start site region 104336	1666 bp downstream
Tssr104337	transcription start site region 104337	1575 bp downstream
Tssr104338	transcription start site region 104338	1558 bp downstream
Tssr104339	transcription start site region 104339	1486 bp downstream
Tssr104340	transcription start site region 104340	1472 bp downstream
Tssr104341	transcription start site region 104341	1432 bp downstream
Tssr104342	transcription start site region 104342	1368 bp downstream
Tssr110238	transcription start site region 110238	1526 bp upstream
Tssr110239	transcription start site region 110239	341 bp downstream