rs233224589 SNP Detail

Summary

• ID
  rs233224589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6192259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCTGAGA CCCTGTCTCA
  AAACAATCAT CATTGTTGTG TGTAAACTCT GTATGTGTGT GTGTGTGTGT GTGTGTGTGC
  GCGCGCGCGT GTCTGCACAT ACCACTGGAG ATCAGAGGAC AACTTTGTGG AGCTGATTCT
  CACACTTTTT TTTTAAGATT AATTTATATG TAAGTACACT GTAGCTGTCT TCAGACCCCT
  Y
  AGAAGAGGGC ATCAGATCTC ATTATAGGTT GTTGTGAGCC ACCGGTGTGG TTGCTGAGAT
  TTGAACTCAG GTTAAGAGCA GTCAGTGCTC TTAACCGCTG AGCCATCTCT CCAGCCCCGA
  TTGTCGCACT TTTATGTGGG TTCCAGGCAG GGAATTTAGC ATCAGACTTT CTCAGCAAGT
  TTTTTTTTTT TTTTTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401669973	MGP_WTSI_19_6142229	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233224589					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401669973	MGP_WTSI_19_6142229	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6192259 () rs orientation: forward

Symbol	Name	Function Class
Arl2	ADP-ribosylation factor-like 2	1092 bp upstream
Cpgi10501	CpG island 10501	653 bp distal
Gm57660	predicted gene, 57660	315 bp downstream
Rr370441	regulatory region 370441	844 bp downstream
Rr543311	regulatory region 543311	692 bp distal
Rr543312	regulatory region 543312	986 bp distal
Rr543313	regulatory region 543313	191 bp distal
Tssr157837	transcription start site region 157837	1107 bp upstream
Tssr157838	transcription start site region 157838	1061 bp upstream
Tssr157839	transcription start site region 157839	1039 bp upstream
Tssr157840	transcription start site region 157840	1020 bp upstream
Tssr157841	transcription start site region 157841	805 bp upstream