rs233228458 SNP Detail

Summary

• ID
  rs233228458
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56977664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATACCAG GTGGAATGCC
  ATTGCCCTTC CTAAGTCTGT ACTTCTCACC TGTCCTGTCT CCCTCAGTGA CAGCTTTCCA
  CATGGACTCC AGTCAGGGAA GGATCCTAAC ACTATCTTTA AGGACCCCTT CTCTGTAGAC
  CCATGCTCTC CCTCATTTTT CTGGGAACTG AAGCCCTGAA CTAGGAAGAG ATTTACCTGA
  R
  CACAACACTG GCTATGCCAA CCCTCTTTCA TCTAGTAACC ACAGAAGGCC ACTGGCTACC
  TCTTCTGTTA TCTACACTGA GCCAGCTGCC TCCTCTTCCT TGGGATTATT CTCAAGTAGA
  CTCTCTTTAA ACGAGATGAG ATCCACTCTG TAGCCTAGGC TGGCTTTGGA CTCAAGGTCT
  TATTCCCTTT GCCTCCCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377681824	MGP_WTSI_9_56918187	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233228458					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377681824	MGP_WTSI_9_56918187	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56977664 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21807	CpG island 21807	1548 bp proximal
Gm10658	predicted gene 10658	within coordinates
Rr368762	regulatory region 368762	1762 bp upstream
Rr401391	regulatory region 401391	1420 bp upstream
Rr679579	regulatory region 679579	within coordinates
Rr679580	regulatory region 679580	781 bp proximal
Rr679581	regulatory region 679581	1552 bp proximal
Sin3a	transcriptional regulator, SIN3A (yeast)	1660 bp upstream
Tssr85282	transcription start site region 85282	1644 bp upstream
Tssr85283	transcription start site region 85283	1685 bp upstream
Tssr89752	transcription start site region 89752	1470 bp downstream
Tssr89753	transcription start site region 89753	1499 bp downstream