rs233238901 SNP Detail

Summary

• ID
  rs233238901
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127484963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCGTGTAT GTGTTTTTTT
  ATTTTTAAAT GCTCTTTTAG TTTTCAGACT TCTCCTTCAC ATTTGCATCT CCCTTCTTAA
  TTCTCAGGAT GTTCTTTACA TTTAGTGCTC AGCTGTGTCA TTCCCTCCTG CTGTTGGAGC
  TGTTGCAGGA ACACAGGAAA TGAGGTCAGG GTTGGAGCAC CTAGGGAGTC TGCATCTTCC
  K
  TTCCAGGCTG TTACCAGTTA CACAGCAAGG GGCACAGTAG GGACATAATG TCAGCTGGTC
  CCTGGGGGCA CAGCAAGCAC ATGATGTCAG CTGGTCCCTG GAGGCACAGT GGGCACGTGA
  TATCAGATGG TCCCTGGCTC CTCCAGTAAG CAGCACCAAC CCTAGACCTT CCGAGGCAGA
  ACTCTGATCT GATGTCATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320956118	CHEV_3_127394232	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233238901					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127484963 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Gm16238	predicted gene 16238	621 bp downstream
Tssr35587	transcription start site region 35587	531 bp upstream
Tssr35588	transcription start site region 35588	10 bp upstream
Tssr35589	transcription start site region 35589	1232 bp downstream