rs233240279 SNP Detail

Summary

• ID
  rs233240279
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73056918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGATCCGCC CCGGCGCGGC
  CGCCTCGCAG AACAGGTTTA CCCGACGCGG CCGGGGCGGC GGGCGGAGGC GGCGGGAGCG
  GAGGGGGAGG GGAGCGGGAG GAGGGAGGGG AGGAGGAGGG GCGAGAGGGA CGACGAGGGA
  GGGGACGGCG GGGAGGGAGG GAAGGAGGGG ACAGCGGGGA GGGAGGAGGC GGGGAGGAGG
  G
  AAGGTGGCAG GGAGAGAGGG GGGCAGGGGA GGAGGCTGGA GGCGGCGCGC GCCGGCGGGA
  TGGGGGGGGG GGGACTCGCT GTGGCGGCCC CCCGCGTGCT TGCCCTGAAT GAGGGACCCC
  AGAAGCGACC CAGGGCACGC GAGCCGAGAC CTTCCCTGCG GCCGAGCGAG GCGACGTCTG
  GTTTCCGGGC GCGGCCAGCC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss394546503	MGP_WTSI_15_73015499	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs233240279					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394546503	MGP_WTSI_15_73015499	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73056918 () rs orientation: forward

Symbol	Name	Function Class
Ago2	argonaute RISC catalytic subunit 2	141 bp upstream
Cpgi7161	CpG island 7161	within coordinates
Rr369949	regulatory region 369949	1865 bp upstream
Rr404436	regulatory region 404436	within coordinates
Rr504021	regulatory region 504021	within coordinates
Rr504022	regulatory region 504022	168 bp proximal
Rr504023	regulatory region 504023	382 bp proximal
Rr504024	regulatory region 504024	1357 bp proximal
Rr504025	regulatory region 504025	1943 bp proximal
Tssr134684	transcription start site region 134684	98 bp upstream
Tssr134685	transcription start site region 134685	176 bp downstream
Tssr134686	transcription start site region 134686	201 bp downstream
Tssr134687	transcription start site region 134687	233 bp downstream
Tssr134688	transcription start site region 134688	252 bp downstream