rs233241186 SNP Detail

Summary

• ID
  rs233241186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:82067466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCAATAC TACTCCAAGC
  TCTGGGAGTG TAGAGGCTAA AGAAAGTATC TGAAAACCAA ACTAAGCAAA CATCTAACCA
  AACCAAACCA AACTAACCAA CCCAACCAAA CAAATCCAAC CAAGCAACTA GCCAACCCAA
  ACCAATCAAT CAACTAAACC AGTCAACTAG CCAACCAAAC CAACCAATCA ATCAACCAAC
  Y
  AATGAACTAA CCAACTAACA AACTAATCAA ATGAACTAAC CAACCAAACC AGACAACCGA
  CCAACAGAAC TAATTCAACC AACCTATCAG CCAACTAACC AACCCAACCA ACTAAACTAA
  CCCACTAGCC AAACAAACTA ATCATTCAAG CTAGCTAACT GACCAAAGGA ATCAATCCTA
  ACAACTTACC AACCAGCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375326003	MGP_WTSI_8_83864736	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233241186					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375326003	MGP_WTSI_8_83864736	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:82067466 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20635	CpG island 20635	1170 bp proximal
Gm51582	predicted gene, 51582	within coordinates
Inpp4b	inositol polyphosphate-4-phosphatase, type II	1719 bp upstream
Rr666047	regulatory region 666047	826 bp proximal
Rr666048	regulatory region 666048	1235 bp proximal
Rr666049	regulatory region 666049	1736 bp proximal
Tssr78167	transcription start site region 78167	1664 bp upstream
Tssr78168	transcription start site region 78168	1687 bp upstream
Tssr78169	transcription start site region 78169	1724 bp upstream
Tssr78170	transcription start site region 78170	1770 bp upstream
Tssr78171	transcription start site region 78171	1864 bp upstream