rs233241263 SNP Detail

Summary

• ID
  rs233241263
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48714578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGCTATT TTAAATTCTT
  TCACTCGGAA TTTCAAGAAG TTCCATGCCT TCGTGATACC ATATCATTTA GTGAACAGGA
  TCTGGGAATC TCAAAATGAA AATGCTGGGG GAAAAAAAAG GGAGCAAGAA GTGTCACAAT
  TTCTCTTTTA ACAAGTAGTG AGACTAGGTA GGTATGGGTT TCCGTAGTGT AGTGGTTAGC
  R
  CGTTCGCCTA CCAAAGCGAA AGGTCCCCGG TTCGAAACCG GGCGGAAACA AAAGGTGAAA
  ACTTTCTACG ACTAGTGGAT GTTTTAAATT TCATTAATTG ATTGTTGGAG AAAGAGACAG
  AGAGGCAGAG ACACCACACC CCCTGCCTAT GCCTCAGGAT GCAAGAAGTA GTCTTTTTGT
  CTTTAGACTC TGTTGTACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323664656	CHEV_11_48637253	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233241263					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48714578 () rs orientation: forward

Symbol	Name	Function Class
Cdk2ap1rt	cyclin dependent kinase 2 associated protein 1 retrotransposed	1595 bp downstream
Cpgi2780	CpG island 2780	1999 bp distal
Cpgi2781	CpG island 2781	439 bp proximal
Gm74096	predicted gene, 74096	within coordinates
n-TGacc1	nuclear encoded tRNA glycine 1 (anticodon ACC)	within coordinates
Rr446122	regulatory region 446122	within coordinates
Rr446123	regulatory region 446123	1904 bp proximal