rs233248402 SNP Detail

Summary

• ID
  rs233248402
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135718843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTGGGGTG AAGTGTGGGA AAGAGGGGCA
  TGAAGGGGGT GGTAGGGCTA GGAGCAGGGG CACCTAACAT AATCAGGGGT GGCTGGGCAG
  TGAGGCTTGG AGGAAGTCTG GAGGGAAGGA CGCCCTGACA GTAGTGTCAA AGCCTGTGGC
  S
  GGTGTCGAGG GAGCAGGAAG CCAAGAAAGC CATGAGGTGT GTGAACCAAC TCCATAGCAT
  CATCAGATCC TTTCAGGAGC TGGAGAGGCT CTAGCTGCAG CCAGGAGAGC AATGAGGAGG
  CTGTGGCGAT GATGCTGGCT ACGGCCAAAG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319993415	CHEV_1_137687682	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233248402					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135718843 () rs orientation: forward

Symbol	Name	Function Class
Rr372093	regulatory region 372093	974 bp upstream
Rr419278	regulatory region 419278	1955 bp distal
Rr419280	regulatory region 419280	804 bp distal
Rr419281	regulatory region 419281	1079 bp distal
Rr419282	regulatory region 419282	1132 bp proximal
Rr419283	regulatory region 419283	1764 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron