rs233259875 SNP Detail

Summary

• ID
  rs233259875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27997743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttgagttct aagccagaca gacacatgaa
  gagaccctat ctcaaaaCAT AACTACAACA ATAACCACCC CACCTAAAAC AACGAAACAA
  TAATTGACAC AGGCAGGAGG ATCTGTTGAG AAGGGAGGGA CTTTCTAGGG TCTTTCCTGT
  R
  ACAGGCTCGC TCTCACTCTA AGCCCTGACC ACACTACAGC CCAAAGGGCT TGAGGCTTGG
  CAGCCATCCC TTCTCCATGC TGCTTGGACT CCTTATCTAG TTACAGCTCC TGTGGAGGCA
  CTAAGTGCTC TGTGGGTACT AGGCTCCACC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325349550	CHEV_17_27915714	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233259875					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27997743 () rs orientation: forward

Symbol	Name	Function Class
Ilrun	inflammation and lipid regulator with UBA-like and NBR1-like domains	within coordinates
Rr330146	regulatory region 330146	1658 bp proximal
Rr340954	regulatory region 340954	1543 bp distal
Tssr147065	transcription start site region 147065	821 bp upstream