rs233262386 SNP Detail

Summary

• ID
  rs233262386
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:62314411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATAATTTTC TTTTCAAACA ATTTCTTTAG
  TAACTCTGTT TTAACTATAA AAATATTAAT TGTATTAATT GTATGTGTTG GCTGGGTAAT
  TTGCTAATCT TTTAGGCTGT GTCAGTGAAT GTGCCACCAT TGGGCTATTT CTGCCTTTAA
  M
  CTCGCTGCCC ACCCCACAAT TTCATATAAT TCCCTATATT AAAAACATGT TTTGTGGAGT
  TCATTTTAAA ACTACAGAAA AAAAAGGATA GTTGAGGATA GTTGTTCCTT CCCATTAAAA
  AAATTCAGAA CAAGACTAAG ATTTCATGAA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325649292	CHEV_18_62340994	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233262386					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62314411 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adrb2	adrenergic receptor, beta 2			1381 bp upstream
Cpgi10125	CpG island 10125			720 bp distal
Gm9949	predicted gene 9949			Intron
				Noncoding-Transcript-Variant
Rr393783	regulatory region 393783			within coordinates
Rr539066	regulatory region 539066			1135 bp distal
Rr539067	regulatory region 539067			515 bp distal
Tssr151487	transcription start site region 151487			1158 bp downstream
Tssr151488	transcription start site region 151488			1586 bp upstream
Tssr153623	transcription start site region 153623			1354 bp upstream