rs233268144 SNP Detail

Summary

• ID
  rs233268144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156266102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATTCTTTA ATGAAGAAAA AGACCTTTGA
  CACTGGCAAA GCACATACCA TGGCCTGCGT TGAAGGAACT TAAAAAGCTT TAGTCTTGAC
  AGAAAGCATT CTTAAGCTGG TTTTGTTGTT GTTGTTGttg tttgtttgtt tgtttgtttg
  Y
  ttgttctgag acagggtctc actatacagt cctggttaac acgagaattc aaagatgccc
  ctgcccctgc ctcccacgtg ctgagatcaa aggcatgagc caccaaccct ggctCATTTT
  AAGTAGATTT TTAGAAAAAG agccagactt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320072187	CHEV_1_158368663	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233268144					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156266102 () rs orientation: forward

Symbol	Name	Function Class
Rr13324	regulatory region 13324	1502 bp distal
Rr31351	regulatory region 31351	442 bp distal
Rr396421	regulatory region 396421	917 bp downstream
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	1163 bp upstream
Tssr14442	transcription start site region 14442	777 bp downstream