rs233274866 SNP Detail

Summary

• ID
  rs233274866
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80076740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTACTAGG TAGTGTAGCA GCTGCTTGGG GATCTCCTCT
  AGGCTTCTAA AGTCTCATCT GTGGTCAACC ACACAGATCT CATTCCTCCC CCCCCCCCCC
  C
  CCGTGGAAGG AGAGCTTCTA TACCACACTA CCCCGTGGAG CTGTGGGTAC TGAGCTGTGT
  TTAAAGGAGG CAGCACAGGT TCTCACCCTG GGCTTGTCA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394694045	MGP_WTSI_15_80022969	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233274866					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394694045	MGP_WTSI_15_80022969	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80076740 () rs orientation: forward

Symbol	Name	Function Class
Gm63613	predicted gene, 63613	within coordinates
Mgat3	mannoside acetylglucosaminyltransferase 3	within coordinates
Rr505908	regulatory region 505908	394 bp distal
Rr505909	regulatory region 505909	within coordinates
Rr505910	regulatory region 505910	474 bp proximal
Tssr4660	transcription start site region 4660	571 bp upstream
Tssr132185	transcription start site region 132185	661 bp downstream
Tssr132186	transcription start site region 132186	357 bp downstream
Tssr132187	transcription start site region 132187	461 bp upstream
Tssr132188	transcription start site region 132188	514 bp upstream
Tssr132189	transcription start site region 132189	534 bp upstream