rs233285003 SNP Detail

Summary

• ID
  rs233285003
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117498144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTC ACAGAAAGTC TTAGGCCTCC
  M
  GCAGGTCCTG TTTGCAGGTG GCCTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324202007	CHEV_12_118772997	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233285003					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117498144 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5227	CpG island 5227	within coordinates
Gm60307	predicted gene, 60307	540 bp upstream
Rapgef5	Rap guanine nucleotide exchange factor (GEF) 5	within coordinates
Rr474129	regulatory region 474129	within coordinates
Rr474130	regulatory region 474130	574 bp distal
Rr474131	regulatory region 474131	164 bp proximal
Tssr115537	transcription start site region 115537	614 bp downstream
Tssr115538	transcription start site region 115538	582 bp downstream
Tssr115539	transcription start site region 115539	568 bp downstream