rs233287973 SNP Detail

Summary

• ID
  rs233287973
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71061581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCTCAGCC TCCCTAGCGT TTGCACGACA GGCGTGTGCC
  ACTTAGCCTG GTCTGTGTGC TGTGCACAGA GCCCGGTTTT TTTTTTTTTG TTTTTTTTTT
  T
  ATGCATGCCA GCGTTGTAAG GACTGAACCC CAGACCAAGC ACGTTTTGTT TGTTTTTCTG
  AAAGTGTTTC TTAACGCGGT AGACAGAGGC AGGAGGATC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss375103098	MGP_WTSI_8_73132830	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs233287973					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375103098	MGP_WTSI_8_73132830	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71061581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20475	CpG island 20475	164 bp distal
Cpgi20476	CpG island 20476	75 bp proximal
Cpgi20477	CpG island 20477	1981 bp proximal
Gm45546	predicted gene 45546	1494 bp upstream
Gm63790	predicted gene, 63790	1462 bp upstream
Rr400904	regulatory region 400904	1913 bp upstream
Rr664832	regulatory region 664832	628 bp distal
Rr664833	regulatory region 664833	127 bp distal
Rr664834	regulatory region 664834	479 bp distal
Rr664835	regulatory region 664835	within coordinates
Rr664836	regulatory region 664836	972 bp proximal
Rr664837	regulatory region 664837	1473 bp proximal
Rr664838	regulatory region 664838	1998 bp proximal
Ssbp4	single stranded DNA binding protein 4	497 bp upstream
Tssr77777	transcription start site region 77777	1459 bp upstream
Tssr77778	transcription start site region 77778	1768 bp upstream
Tssr81636	transcription start site region 81636	601 bp upstream