rs233300088 SNP Detail

Summary

• ID
  rs233300088
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5120052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGGATA CCACTTCTAA
  AGCCCATCAA CACCCTTTGC TCCCAGATGC TCCAGGTATC AGAACCCAGG CCCCCCAGCT
  TTCTGTCTCA GCTCTCCAGC CCCCTCTTCC TACCAACTCC AGGTCTTCTG TCCATGAAAC
  TCCTGTGCCT GCTGCCAACC AGCCCCCAGC CTTCCCTTCT TCTCCCCTCC CCCCTCAGAG
  S
  CCCACTAACC AGACCTCATC TATCAGCCCT ACACATTCCT ATTCCAGAGC CCCTCTAGTC
  CCAAGGGAAG GAGTTCCCAG TCCCAAATCA GTGCCACAGC TGCCCTCGGT GCCCTCCACA
  GCAGCTCCAA CAGCCCTGGC AGAGTCAGGT CTTGCAGGCC AAAGCCAAAG GGATGACCGC
  TGGCTGCTGG TGGCACTCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401649269	MGP_WTSI_19_5070024	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233300088					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401649269	MGP_WTSI_19_5070024	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5120052 () rs orientation: forward

Symbol	Name	Function Class
Cd248	CD248 antigen, endosialin	within coordinates
Cpgi10428	CpG island 10428	963 bp distal
Cpgi10429	CpG island 10429	1503 bp proximal
Cpgi10430	CpG island 10430	1894 bp proximal
Rr405800	regulatory region 405800	1973 bp upstream
Rr542919	regulatory region 542919	1936 bp distal
Rr542920	regulatory region 542920	1233 bp distal
Rr542921	regulatory region 542921	1712 bp proximal
Tmem151a	transmembrane protein 151A	807 bp downstream
Tssr154380	transcription start site region 154380	1939 bp downstream
Tssr154381	transcription start site region 154381	1926 bp downstream
Tssr154382	transcription start site region 154382	1909 bp downstream
Tssr154383	transcription start site region 154383	1902 bp downstream
Tssr154384	transcription start site region 154384	738 bp downstream
Tssr154385	transcription start site region 154385	578 bp downstream
Tssr154386	transcription start site region 154386	319 bp downstream
Tssr154387	transcription start site region 154387	271 bp downstream
Tssr154388	transcription start site region 154388	189 bp downstream