rs233300990 SNP Detail

Summary

• ID
  rs233300990
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79518789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCATGCCC AGGCAACTCC
  CCACCACGAG ACGCAGGGGC CTCTAGAGCC TGCTGCTGGT CAGCGTGTTC CCAGGTTGTC
  CTACACTGGA CTAAACTTGT ACCTGGGAAA GGATCTTTCC CTGTTGTCCC CACCCTTCCA
  TAATGCTTCT GGTAAAGGGT CTCTCCGGGG ACAGTTGTTT TCCTTCTTGT CCCGTCCCCC
  T
  CTCAACCCCC CCCCTCCGGT TAGTTCCCCC TACCCCAAGA CACAGAAGCC TCTGGAGCCC
  CCTGCTGGCA AGCATTTTCC CAGGTTGTTC CTCACCCTAC CAGCATGTGG TAAAACCTGG
  AAAGGTTCTT AGGTTGTCCC AAGACATAAA GGACCACGGG CAGCTGCTAG CTGGTATCCC
  AAGGCCCTGC CCCCTACGCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381007696	MGP_WTSI_10_79145700	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233300990					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381007696	MGP_WTSI_10_79145700	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79518789 () rs orientation: forward

Symbol	Name	Function Class
Cdc34	cell division cycle 34	within coordinates
Cpgi1800	CpG island 1800	99 bp distal
Gm67172	predicted gene, 67172	1202 bp downstream
Rr402019	regulatory region 402019	1000 bp downstream
Rr434867	regulatory region 434867	1359 bp distal
Rr434868	regulatory region 434868	541 bp distal
Rr434869	regulatory region 434869	within coordinates
Rr434870	regulatory region 434870	537 bp proximal
Tssr3269	transcription start site region 3269	1915 bp downstream
Tssr3270	transcription start site region 3270	1122 bp downstream
Tssr94367	transcription start site region 94367	1142 bp downstream
Tssr94368	transcription start site region 94368	794 bp downstream
Tssr94369	transcription start site region 94369	725 bp downstream
Tssr94370	transcription start site region 94370	708 bp downstream
Tssr94371	transcription start site region 94371	633 bp downstream
Tssr94372	transcription start site region 94372	547 bp downstream