rs233301562 SNP Detail

Summary

• ID
  rs233301562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73070920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTCCCCT ACTGATCCCC
  AGGACAGGTG GTGTGGTGGC CAGTCTTTTT GTTTTTGTTT TTTGTTTTTT GTTTTTTTGT
  TTTTTTTGAG ACAGGGTTTC TTGTGTAGCC CTGGCTGTCC AGGAATTTAC TTTGTAGACC
  AGGCTGGCCT CGAACTCAGA AATCCACCTG CCTCTGCCTC CCAAGTGCTG CGATTAAAGG
  Y
  GTGCGCCAAC ACGCCCGGCA GGTGTGGCCT GTTATACCAG CACTTTGGAG GCAGAGGCAG
  GAAGATGGCC ATCCTGGACT ATATAAGAAA AGACTATAAG ATATAAGAAA AACCTATTAC
  ACACACACTG CAAATAAAAA CAGAACTCCC TCCTCCAGAA TCCTTAACGT TGGGAAATGA
  CCCAAATCTT ATCATTTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375129487	MGP_WTSI_8_74840975	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233301562					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375129487	MGP_WTSI_8_74840975	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73070920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20584	CpG island 20584	1522 bp proximal
Gm63983	predicted gene, 63983	within coordinates
Klf2	Kruppel-like transcription factor 2 (lung)	1986 bp upstream
Rr382265	regulatory region 382265	within coordinates
Rr400967	regulatory region 400967	1750 bp upstream
Rr665299	regulatory region 665299	384 bp distal
Rr665300	regulatory region 665300	452 bp proximal
Rr665301	regulatory region 665301	773 bp proximal
Rr665302	regulatory region 665302	1467 bp proximal
Tssr2606	transcription start site region 2606	1824 bp downstream
Tssr77968	transcription start site region 77968	1805 bp upstream
Tssr77969	transcription start site region 77969	1817 bp upstream
Tssr77970	transcription start site region 77970	1977 bp upstream