rs233309058 SNP Detail

Summary

• ID
  rs233309058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:25365945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATCTGTG GGTTTTTAGA
  GGTTGAAAGA TATCTGTCCA GGCCCTTCTA GATTTTAGAA GTCTCTGTTG AGAAGTTAGG
  TATAATTCTG ATAGGTCTGC CTTTTAAAAT GTTTCCTAGC CTTTTTCCCT TGGTGCTTTT
  AATATTCTTT CTTTGTTCTG TAGATTATAT GTTTTGATTG CTGTGTGCTG GCAGGATTTT
  Y
  TTTTCTGGTC CAGTTTGATT GTTGTTCTTA AGCTTCTTGT ATATTTATAG GCATCTCTTT
  CTTTAGGTTG AGAAAGTTTT CTTCTATGAT TTTGTTGAGA ATATCTTCTG GGCCTTGTAG
  CTGGGACTCA ACAACTTCTT CTATTCTTAT TTTTCTTATG TTAAGTCTTT TCATGGTATC
  CCAGATCTCC TGGATGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325560753	CHEV_18_25391389	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233309058					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:25365945 () rs orientation: forward

Symbol	Name	Function Class
AW554918	expressed sequence AW554918	within coordinates
Gm58918	predicted gene, 58918	1404 bp upstream
Tssr150327	transcription start site region 150327	1397 bp upstream
Tssr150328	transcription start site region 150328	1413 bp upstream
Tssr150329	transcription start site region 150329	1430 bp upstream