rs233311375 SNP Detail

Summary

• ID
  rs233311375
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74529989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCAAAAG GCAGCGGGTT
  TTTTTGTTTG TTTGTTTGTT TGTTTTGTTT TTTGTTTTTT GTTGTTGTTT GTTTTCTTTG
  TGGGTGCTTG ATTCAGAAAC TCTGCAGCGA CTCGGACTTT CTTCTTTTTT TAGGTAGAAG
  TGACTGTGTG GTTGGTCTCT GTGAGTTATC TGGGGGACAC TGTATTTGCT CGCATATGTA
  Y
  TGGAGAAACC AAGTGGCTTT GGAGTCTTGT CCTGTCCCAC TCCCTCCCTT CCCTGCTCCC
  CTGATTCCTT AGGAAATGCT ATATTTTGTG AGTGCACGCA GGCTTGATGG AGCCCTATTC
  TATGTAAATG TCCCTCATGT TTCTGAAAAG TGCTGTAGTT TAGTCTCACC CTATCCAGCC
  TCCCAAACAG GGCCAACGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354484963	MGP_WTSI_2_74537702	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233311375					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484963	MGP_WTSI_2_74537702	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74529989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11799	CpG island 11799	320 bp distal
D2Tfv11	DNA segment, Chr 2, Thomas F. Vogt 11	24 bp proximal
Gm56188	predicted gene, 56188	1361 bp downstream
Gm75671	predicted gene, 75671	1196 bp upstream
Hoxd9	homeobox D9	mRNA-UTR
Igs15	intergenic site 15	within coordinates
Rr559358	regulatory region 559358	1908 bp distal
Rr559359	regulatory region 559359	706 bp proximal
Rr559360	regulatory region 559360	1207 bp proximal
Tssr18414	transcription start site region 18414	1971 bp downstream
Tssr18415	transcription start site region 18415	1894 bp downstream
Tssr18416	transcription start site region 18416	1694 bp downstream
Tssr18417	transcription start site region 18417	1663 bp downstream
Tssr18418	transcription start site region 18418	1637 bp downstream
Tssr18419	transcription start site region 18419	1619 bp downstream