rs233314568 SNP Detail

Summary

• ID
  rs233314568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24851333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACGCTTT CCAGACAAGT
  CTGAGGATCT GAGTTTGTAT CCCACACTGA GAGCCTGTGC AATCCCTCAC TGGAAAGACA
  GAGGCAGAGA CCCTGGGGTT TGCTGGCCAT CAGTCCAGTC CACTCAGCAA GCTCTAGATC
  TAATGACACA TACTGTCTTC TTAAATAAGA TGGAAATCAA CTGAGGAACA AATCCACACA
  Y
  GTGCACACAC TATCTATAAA GATAGTGTGA AGATAAAGAC TATGTGTGTG TGTATACTGT
  ATCATATATA TTATATTATG TTATACAATT ATGTTAAATA ATTATATAAT TTAATATATA
  CAATGTTATA TATAACATAT TATGCATATT ATATATAATG TTATCATAAT GTGTAATTGT
  ATATTATATA TAATTTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321496137	CHEV_5_24152153	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233314568					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24851333 () rs orientation: forward

Symbol	Name	Function Class
1700022A21Rik	RIKEN cDNA 1700022A21 gene	1349 bp upstream
Tssr45438	transcription start site region 45438	872 bp downstream
Tssr45439	transcription start site region 45439	865 bp downstream
Tssr45440	transcription start site region 45440	852 bp downstream
Tssr45441	transcription start site region 45441	835 bp downstream
Tssr45442	transcription start site region 45442	829 bp downstream