rs233315445 SNP Detail

Summary

• ID
  rs233315445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131456222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGGAGCG CTCTGCGGGC
  GGAGCTCGCG CTGGGAGTGG TCAGAGAGGC GAGGCTTTAA AGGGAAGAAG CCCGCTGGGA
  ACTGGGAAAT CGCCCAATTC CGGAGCCGGG GTCGGAGCTG AAGAGTAGAA GATTCTTGAA
  GACCAGAGAA AGTTAAACCT GTTGCGGAAG TTTCCCTTCA ACTCCACTTG TCTCTCCCCA
  Y
  CTTGAACTCC ATTTCCCTTC CCTCCCCAAG TCAAAAGGAA GTAAAATTTG CTCTTCCTAC
  TCAATAAATA CTAAGTTTCC CTTTCCACCA GGAAAATAGG ACTCTCTTCC CAGTTTTAGA
  GCGTAGAGAA CGAGAGGCCT TCCGTCTTGA TTGTTAGCCT GAGGAAATCA AAGTTTCCCC
  TTTCAAAATT CTGCACCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351452138	MGP_WTSI_1_133425061	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233315445					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351452138	MGP_WTSI_1_133425061	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131456222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	within coordinates
Gm70877	predicted gene, 70877	796 bp downstream
Rr396286	regulatory region 396286	901 bp downstream
Rr396287	regulatory region 396287	591 bp downstream
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	1132 bp upstream
Tssr8629	transcription start site region 8629	613 bp downstream
Tssr8630	transcription start site region 8630	573 bp downstream
Tssr8631	transcription start site region 8631	482 bp downstream
Tssr8632	transcription start site region 8632	108 bp downstream
Tssr13598	transcription start site region 13598	1936 bp upstream
Tssr13599	transcription start site region 13599	1894 bp upstream
Tssr13600	transcription start site region 13600	1739 bp upstream
Tssr13601	transcription start site region 13601	1191 bp upstream
Tssr13602	transcription start site region 13602	1099 bp upstream
Tssr13603	transcription start site region 13603	944 bp upstream