rs233321452 SNP Detail

Summary

• ID
  rs233321452
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6136098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTACAAC CGGGCGTCCC
  CGCAGGCTGG TCTCTGAGGG AGGGTAAGTT CCAGGGCACG TCGAAGCGCG CCGGCGCGGG
  GGTGGGGCAG GCACAAGCAG GGGCGGGACA TTTGGCCACG TGACGAGAGG GGCTGGTGGT
  CTCCCGGGAG GGCGGGGCGG AGGGACGTGA GAAGGTGTGG CGAGACGCTT AAGAGGGGGA
  W
  TGGGGGTGGG GTAGTAACCA CGTGATAAGC GGAGGCGGGA CAGGTACTGT AAATGGGGAG
  GGCAAATGGT TGGGAGCACG TGACAGAAGG GGCGGGGCAA TGGCTCTTGT GAGCTACGGG
  AGGCTCACGT GACGGCTGGA GTGGGCGGGG CGCCAGGTCC CAAGCAGCAA AGGGCAAGTG
  GGGCAAGGTA GTCCCGGAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399596424	MGP_WTSI_18_6136096	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233321452					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399596424	MGP_WTSI_18_6136096	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6136098 () rs orientation: forward

Symbol	Name	Function Class
Arhgap12	Rho GTPase activating protein 12	within coordinates
Cpgi9676	CpG island 9676	within coordinates
Gm58680	predicted gene, 58680	118 bp upstream
Rr405549	regulatory region 405549	within coordinates
Rr533476	regulatory region 533476	221 bp distal
Rr533477	regulatory region 533477	within coordinates
Rr533478	regulatory region 533478	129 bp proximal
Rr533479	regulatory region 533479	1192 bp proximal
Tssr149959	transcription start site region 149959	322 bp upstream
Tssr152338	transcription start site region 152338	868 bp upstream
Tssr152339	transcription start site region 152339	228 bp upstream
Tssr152340	transcription start site region 152340	99 bp upstream
Tssr152341	transcription start site region 152341	30 bp upstream