rs233329383 SNP Detail

Summary

• ID
  rs233329383
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57880835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTACAT TTATGACTTG
  TTAAATGCTG TAATATGGAG GTTTGTCTGC CAGATATGTT TTACATGTAG AATGTGTCAT
  CCGAGGAGAA TTGAGGTGAA AGAGAAAGTT CTTATATAGT CTCATTCAAT GTGTAATAGA
  GAATAAATAT TAATATTTCA TAGCTTTCAG TATTATTAAA TATTAAAATA TTTTCTACAT
  T
  TAGCATTTTA TTTTATAGCA TTTATTTTGG ATAATAAGAA GGAGCAGAAG TAATATACTT
  TTAAAAAAAT ACTCTACTAA AATACCTTAT TAAAAGCAGT AAAAAAAATA TAGATTTGAC
  CTACTATGTA TGAAATAGCT TTTGAAAGTA GATCTTTGGA TGCATGTAAG CTTGAATAAT
  TTATTTACTT GAAATCACTA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss365063279	MGP_WTSI_5_58114732	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs233329383					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365063279	MGP_WTSI_5_58114732	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57880835 () rs orientation: forward

Symbol	Name	Function Class
Gm42635	predicted gene 42635	900 bp upstream
Pcdh7	protocadherin 7	within coordinates
Rr125227	regulatory region 125227	34 bp distal
Rr125228	regulatory region 125228	165 bp proximal
Rr125229	regulatory region 125229	1365 bp proximal
Tssr46294	transcription start site region 46294	1618 bp downstream
Tssr46295	transcription start site region 46295	1484 bp downstream