rs233338230 SNP Detail

Summary

• ID
  rs233338230
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:21789535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCCAGAA GCATCTTACT
  TGGTAGATTA TAGCAACCAT GACAAAGACT AGATCCACCA AGTGAGCTAG GAGAGAAAGT
  CTAACTCTAG CCATTACAAC TCATTTAGCC TCAAATATTA GAGAATTCCA ATTATAGGAT
  GGCAAACAAA AGGCAGTTAT CATAGTCCCA CAAGACATTT CAGTCTTTAA ATAAGTCACT
  C
  GTGACCTGGA CAAAATAAAT TTATAATTAA CTCAATGTGT GTCATCCTTC TGAATGTAAT
  TATCTGAGGA TATAGGTTCT CTGTTTCCTG GAAGAGTTCG CATAACTCCA GTAAGTGTCA
  ATCAGCAAAC ACATGACACA GTCACATTGG TCAACCTCTC TACTAATGTT CTCCAATACC
  TCTAGTCTAC ATAGCTACAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ
ss373911912	MGP_WTSI_8_22439198	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ
rs233338230					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373911912	MGP_WTSI_8_22439198	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:21789535 () rs orientation: forward

Symbol	Name	Function Class
Defa5	defensin, alpha, 5	1144 bp downstream
Gm65300	predicted gene, 65300	within coordinates