rs233339012 SNP Detail

Summary

• ID
  rs233339012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121422601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGAGTCAA CTCCGGCCAG
  GGCAGCCCCG GTGCCCGGGC GGCCGCCAGG GCCCATCCCG GGCGAGCGCG AGGCTGCGGG
  GCTCCCGGGG CCGCGGCCCC GCGCTGACTC AGCACGCCGC CTCCCCGACC CCTGGGCGCG
  CCCCCGCCCG GCCCCTCCGG CCCCGTCCGC CCCCACCGGC CTCCGCCCGC CCCTCTTACC
  Y
  CGCGAGTGTC CGCCGCGTAC AGCCCGCGGC TCCCGGGCCT TCTCGCGCCC CAGGCTACTT
  CCGGCTTCGC CAGCCCGGGC CACGGAGCAC GTGACCGAGT GCGGGGCGCG CCTGCGCGTG
  CGTACTCCGC GGCGGCCGAG CTCGCTGGGC TGCAGTCTCC AGTGCGGGCG GGAGGAGCTA
  AGGGAGTGCG GGGCGGCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382025229	MGP_WTSI_10_121023752	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233339012					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382025229	MGP_WTSI_10_121023752	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121422601 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	within coordinates
Rr402304	regulatory region 402304	523 bp downstream
Rr402305	regulatory region 402305	30 bp upstream
Tbk1	TANK-binding kinase 1	within coordinates
Tssr96043	transcription start site region 96043	454 bp downstream
Tssr96044	transcription start site region 96044	433 bp downstream
Tssr99623	transcription start site region 99623	813 bp upstream
Tssr99624	transcription start site region 99624	786 bp upstream
Tssr99625	transcription start site region 99625	726 bp upstream
Tssr99626	transcription start site region 99626	14 bp downstream
Tssr99627	transcription start site region 99627	34 bp downstream
Tssr99628	transcription start site region 99628	117 bp downstream
Tssr99629	transcription start site region 99629	145 bp downstream
Tssr99630	transcription start site region 99630	173 bp downstream
Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	684 bp downstream