rs233344991 SNP Detail

Summary

• ID
  rs233344991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70356235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGAGAGA AGCATTGCGC
  CTGCGCAGAA TGAGCTGTTG CACGGTGGGT TGCCATGCTA CAGAGAAACC GTGGGCCAGC
  CGTGCACGCT AAGTTCCAGG TTGGAACCTG CAATAAATTC GCTCTTCCTT GCAACTGGGG
  TTAGCGGTGG AACCTTGTCA CTGAGCAGGG GGTGGGAAGT TTTCGGCAAC TTAGAGAAAG
  R
  CGAGTATGTG GAAATTCTAC CTTTAGACCT AAAAACCGGA GTAGGGAGAT TCAAATCCTG
  ATTCTTCACG TCCCTAAACT GGATAAATTC CTAAAAGTTC TATAGTCATC CGCCAGGATC
  TGATGATACT TGAATTGGGA TCAGCGGGAC TGCCTGTTGG CTGGAACAGC ATTTACAGAT
  GTGACACCCA CATAGGTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375092141	MGP_WTSI_8_72427484	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233344991					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375092141	MGP_WTSI_8_72427484	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70356235 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20428	CpG island 20428	within coordinates
Ndufa13	NADH:ubiquinone oxidoreductase subunit A13	1027 bp upstream
Rr400887	regulatory region 400887	1754 bp downstream
Rr400888	regulatory region 400888	102 bp downstream
Rr664595	regulatory region 664595	1391 bp distal
Rr664596	regulatory region 664596	383 bp distal
Rr664597	regulatory region 664597	876 bp distal
Rr664598	regulatory region 664598	757 bp distal
Rr664599	regulatory region 664599	618 bp proximal
Tssk6	testis-specific serine kinase 6	67 bp downstream
Tssr2594	transcription start site region 2594	1789 bp downstream
Tssr77689	transcription start site region 77689	1391 bp downstream
Tssr81544	transcription start site region 81544	1928 bp upstream
Tssr81545	transcription start site region 81545	1913 bp upstream
Tssr81546	transcription start site region 81546	1578 bp upstream
Tssr81547	transcription start site region 81547	1561 bp upstream
Tssr81548	transcription start site region 81548	363 bp upstream