rs233347402 SNP Detail

Summary

• ID
  rs233347402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121573977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCTGCTC CTCTGATCTA
  ATGGACTCGG TGGTGTCTAC AGTCAATACT GTAGTCAGTG TACACCTGCA ATACTAACAG
  GCCCTGCTAT CTGTAATCTA GACATGTCAA GCCAAGTTAT AGTCATGACT GCAGTGCATA
  ATAAGAGTAC CTTCACACTA TATATAGCAG CCCTTGAAAT TTTGTTTGGG GGCTGTGGGG
  R
  CAGGGTTGGG AGGTGGGTCG GTCCATAAGT GACTGCTGTG CAAGGACCTA AAATCAGATC
  CTCCATAAAA GCTGGGCTTG AGACAAATGT TTGTAACCTG GGCTGTGGGT GGGTCAAGAC
  TGTTGGATCC CTCGAGCTCA TAGGCTAGCT AACCTAAACA ATCTGTGGGC TCTAGGCTCA
  ACGAGTGACC CGTGTTAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323514824	CHEV_10_121175128	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233347402					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121573977 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2295	CpG island 2295	1331 bp proximal
Kics2	KICSTOR subunit 2	1858 bp upstream
Rr440270	regulatory region 440270	1375 bp proximal
Tssr96047	transcription start site region 96047	1843 bp upstream