rs233370539 SNP Detail

Summary

• ID
  rs233370539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154720320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGGATGG CGCCGGCACT
  GGGACGGGAG GGCGCGCTGG GCGGCTGCGA GACACGGTGG CCATAGTGCG GACGGCAGGA
  GCCGGCGGGC TGCGGTGGGG ACCAGCCCGC TGCTGGCTGA GCGCACAGCC CCAGGCACGG
  CTCGAGGCGG CGCGAAAGAG AAAGTAAGCC CCGGGCCCGG GTAGCCTCGC CGGGACATTG
  R
  TCCCTCTGGG GCTCGCGGGT GCCGGGGACA GCATGTGCGA GAGGGTCGGA GCGAGGCCAA
  GCGAGGCAGG GCGGCGGGTA GCAAAGCGGC CAGTGAGGAC CCCGCTGCCG GAGGCGCCGG
  CACCGGGCGG CCGGAGCGAA TCGCGAGGAT CACAGAGGAG CGCCGGCCAC CACGCGGGGC
  ACCACTTGGG AATAAACTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363773538	MGP_WTSI_4_154009972	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233370539					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363773538	MGP_WTSI_4_154009972	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154720320 () rs orientation: forward

Symbol	Name	Function Class
5930403L14Rik	RIKEN cDNA 5930403L14 gene	within coordinates
Cpgi15444	CpG island 15444	within coordinates
Gm57100	predicted gene, 57100	421 bp upstream
Prdm16	PR domain containing 16	within coordinates
Prdm16os	Prdm16 opposite strand transcript	1717 bp upstream
Tssr1394	transcription start site region 1394	1047 bp upstream
Tssr40591	transcription start site region 40591	1278 bp upstream
Tssr40592	transcription start site region 40592	1683 bp upstream
Tssr40593	transcription start site region 40593	1706 bp upstream
Tssr44877	transcription start site region 44877	256 bp downstream
Tssr44878	transcription start site region 44878	341 bp downstream
Tssr44879	transcription start site region 44879	362 bp downstream
Tssr44880	transcription start site region 44880	437 bp downstream
Tssr44881	transcription start site region 44881	910 bp downstream
Tssr44882	transcription start site region 44882	946 bp downstream
Tssr44883	transcription start site region 44883	968 bp downstream
Tssr44884	transcription start site region 44884	1100 bp downstream