rs233394553 SNP Detail

Summary

• ID
  rs233394553
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:70081069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCGCCCC TACCGCCGGC
  TTTTCCACCG CCTCCATCTC CTCCTCCTCC GCCTCCTCTT CCTTCCCCCA GCGGGCGTGC
  AGTCTCAGCC GGTTCAGACT GGCCAGGGTG CCCCTGCAGA GGAGATCTGA GAGTGGGACC
  ACCCCGGGAG TGACTTCCCG GGGTGGGCGG TGGGGGTGGG GAAGGTGGAG CCGGCCGGGC
  S
  GGCTGCACTC CATGTGTCCC GAGGGCAGAG GGCGGCGGCC GTATATTGCG CGCAGCGGGA
  CTGCTCGCCC AGCGCAGGGC CCGGATCAGC AGCTGCGGCC GGAGCTGCGC CCGCGGCCCC
  AGCCGAGGCC GGGACTCAGG TAAAAACCCC AGGAACTGGG AAGGTCCCGG CGGGAGCTGT
  CCCCTCACCC TGCAAACTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380805375	MGP_WTSI_10_69707987	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233394553					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380805375	MGP_WTSI_10_69707987	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:70081069 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1697	CpG island 1697	within coordinates
Gm66806	predicted gene, 66806	73 bp upstream
Rr433588	regulatory region 433588	1733 bp distal
Rr433589	regulatory region 433589	129 bp distal
Rr433590	regulatory region 433590	within coordinates
Rr433591	regulatory region 433591	198 bp proximal
Slc16a9	solute carrier family 16 (monocarboxylic acid transporters), member 9	37 bp upstream
Tssr94008	transcription start site region 94008	99 bp downstream
Tssr94009	transcription start site region 94009	1 bp upstream
Tssr94010	transcription start site region 94010	21 bp upstream
Tssr94011	transcription start site region 94011	1176 bp upstream