rs233402854 SNP Detail

Summary

• ID
  rs233402854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123279995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGGGTCG ACGTCTGCCT
  CCCCTCCAGG CTTCTAGTAG TCATACACAC GATCACCCCC CACTCGAAAC CCAGCCCTTT
  TCGCCGAGAC TCCACGCGTC CACCACCGGC CTGGGCAGTT TGGAAACAGT TTGGGAGGCC
  CTGGGGGCGC ACACCGTGGA GTCTTCCGTA GCTGGAAGGG TAGCCCCAGC CGCGGGGGAG
  R
  TAGAAGCCGT GGAGACCCCC CTCTCCCCCG TCAGCCAAGC CCCCCACCTC AGTCCCAGCA
  GAATAAATAA ATTAAAAGGC CTTCCCCCCG GGGAAGGGGG GGGAGGCAGT GTGGGAGCGC
  GCGAGTGAGG GGTGGGGGGC CGCTGGGGCC CGGGGCTTTG GCGGCGCAGC TGCCGCCGCC
  GGGAGAGTGC CTGGGGAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366533360	MGP_WTSI_5_123591941	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233402854					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366533360	MGP_WTSI_5_123591941	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123279995 () rs orientation: forward

Symbol	Name	Function Class
AI480526	expressed sequence AI480526	within coordinates
Cpgi16577	CpG island 16577	within coordinates
Gm38102	predicted gene, 38102	within coordinates
Rr367945	regulatory region 367945	232 bp downstream
Rr378574	regulatory region 378574	1325 bp downstream
Rr399342	regulatory region 399342	407 bp downstream
Setd1b	SET domain containing 1B	261 bp upstream
Tssr48764	transcription start site region 48764	692 bp downstream
Tssr48765	transcription start site region 48765	496 bp downstream
Tssr48766	transcription start site region 48766	178 bp upstream
Tssr48767	transcription start site region 48767	255 bp upstream
Tssr48768	transcription start site region 48768	298 bp upstream
Tssr53210	transcription start site region 53210	1952 bp upstream
Tssr53211	transcription start site region 53211	1807 bp upstream
Tssr53212	transcription start site region 53212	1783 bp upstream
Tssr53213	transcription start site region 53213	1201 bp upstream
Tssr53214	transcription start site region 53214	838 bp upstream
Tssr53215	transcription start site region 53215	599 bp upstream
Tssr53216	transcription start site region 53216	570 bp upstream