rs233405577 SNP Detail

Summary

• ID
  rs233405577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106364972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGAAAGC TAAAATTCCA
  AGGCATCCAT AGGCAGGAAA AGAAATTAAA CAGGGTATTT ATCCTGGCAT TAAGTCTTTT
  GCATTTAAAA GCTTCCTTTG ATAAACTGCT GGAGTAACCT TTTCGTACCC ACTCTAACAC
  GGATTTTCTT TTTTTTTTTT TGGTTTTTCG AGACAGGGTT TCTCTGTATA GCCCTGGCTG
  Y
  CTTGGAGCTC ACTTTGTAGA CCAGGCTGGC CTCGAACTCA GAATCCGCCT GCCTCTGCCT
  CCCGAGTGCT GGGATAAAAG CCTTTCCCCA CCACGCTTAA CACGGATTTT CTTACCAATT
  AGCCACTGAT GTGTGGCTTA GGTTCTTAAG AAAAAAATCT AGGTTGACAT TTTCAGAAAG
  AAAAGATAAT GAGGTGCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375916418	MGP_WTSI_8_108162240	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233405577					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375916418	MGP_WTSI_8_108162240	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106364972 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20943	CpG island 20943	436 bp distal
Ctcf	CCCTC-binding factor	within coordinates
Gm5914	predicted gene 5914	866 bp upstream
Rr185893	regulatory region 185893	within coordinates
Tssr79170	transcription start site region 79170	1841 bp downstream
Tssr79171	transcription start site region 79171	1751 bp downstream
Tssr79172	transcription start site region 79172	1728 bp downstream
Tssr79173	transcription start site region 79173	1361 bp downstream
Tssr82680	transcription start site region 82680	1007 bp upstream
Tssr82681	transcription start site region 82681	948 bp upstream
Tssr82682	transcription start site region 82682	843 bp upstream
Tssr82683	transcription start site region 82683	408 bp upstream