rs233405941 SNP Detail

Summary

• ID
  rs233405941
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:9617375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAAATTA TATCTACCTG
  TGATTTGCAA GTATTGTAAA TGGATGCAGG TACCTGGTGT TGCTTTTAAC TTTTACTGTC
  GGTAGAGGTT GCATGTGAAG CCAGTAACCT GGGCACCAAT ATGGAGTGTG CTTGAGAAAA
  ACAAAGTAGT TACAGTGGTT CTAAAAAAGA CCCCTTGTTT TAGGAAAACT TTGGCCCTAA
  M
  TATAATATTA AAAGTATAGT GCTTTTTGGT GTTGGTTCAG GTGGTGCATT TGGCCAATGG
  ATTGCTTTAA GTCCAGAAAT AGTTGTCATT TTGTTTGTAA CCGGTGGCTT TTGTTTAATT
  GGCTTGGGTT TTAGATATTG TCAAAATATC TGGCATTCAC TATGGAACCA AGGCTGCCCT
  GGAACTCAGG GCCAAGTGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348582942	MGP_WTSI_1_9537231	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233405941					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348582942	MGP_WTSI_1_9537231	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:9617375 () rs orientation: forward

Symbol	Name	Function Class
Adhfe1	alcohol dehydrogenase, iron containing, 1	798 bp upstream
Cpgi23	CpG island 23	911 bp distal
Rr395961	regulatory region 395961	1754 bp downstream
Rr407596	regulatory region 407596	1952 bp distal
Rr407597	regulatory region 407597	1732 bp distal
Rr407598	regulatory region 407598	1796 bp distal
Rr407599	regulatory region 407599	1568 bp distal
Rr407600	regulatory region 407600	603 bp distal
Rr407601	regulatory region 407601	990 bp distal
Rr407602	regulatory region 407602	371 bp proximal
Rr407603	regulatory region 407603	809 bp proximal
Rrs1	ribosome biogenesis regulator 1	mRNA-UTR
Tssr5894	transcription start site region 5894	1762 bp downstream
Tssr5895	transcription start site region 5895	1671 bp downstream
Tssr5896	transcription start site region 5896	1655 bp downstream
Tssr5897	transcription start site region 5897	1162 bp downstream
Tssr5898	transcription start site region 5898	899 bp upstream
Tssr5899	transcription start site region 5899	964 bp upstream