rs233411715 SNP Detail

Summary

• ID
  rs233411715
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127903249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGGCTCTC ATAACTAAGA CATTCTAAAT
  GCAATCATAG AAgctgagga tgcaacgtga tgttagagca ttcattcact accatgcaca
  aggccctggg ttcaatTaca cacacacaca cacacacaca cacacacaca cacactcata
  Y
  acaGTgagag agagggggga gagggagagg gagagggaga gggagaggga gagggagagg
  gagagagaCT CACACACAGA CACACACACA CTAgtttgga agtctattgt aatgttaaat
  gtacacttat tctatgatcc agaaattctg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320501478	CHEV_2_127887065	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233411715					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127903249 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	within coordinates
Rr397293	regulatory region 397293	38 bp downstream
Rr397294	regulatory region 397294	172 bp upstream
Rr564634	regulatory region 564634	within coordinates
Tssr20040	transcription start site region 20040	1771 bp upstream
Tssr20041	transcription start site region 20041	1792 bp upstream