rs233426577 SNP Detail

Summary

• ID
  rs233426577
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156080042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATGTTAT GAAATAAATA
  TATTTAGTGA AGCATTTGCT TCCACTTAAC TGTGGTGGTC TGTCTTTTTT TTTTTTTTTT
  TTTTTTTTCT CTCCCTGAGA CAATACTTCT CTGTGTAGCC CTGGTTATCA CCCAAGTGCT
  GGGATTAAAG GTTGATAGTG AGAATTTGGA ATTTTGGTTG CTTTAAAAAT CACAAATATT
  M
  TAAGGGTGTG CTTCCATTTT AATCCCAGGC ATAAAGATGT GGGGCTGCTC TGGACTCTCC
  ATGGCAGCTG ACTGTGATTT GCCTTGCGCT GTAGCAGAGG CGTGGTTTTG CCAGCTATAG
  AAAATGTTCT GCGATTGATT GACATTTGGA ATTCTGGGAA CTTTTCAGAG GATATATAAA
  TGCTAGGGCA CCTAGAGGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444415	CHEV_4_155369694	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233426577					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156080042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15496	CpG island 15496	1748 bp distal
Rr100725	regulatory region 100725	1041 bp distal
Rr377473	regulatory region 377473	1212 bp downstream
Sdf4	stromal cell derived factor 4	within coordinates
Tssr40753	transcription start site region 40753	754 bp upstream