rs233432173 SNP Detail

Summary

• ID
  rs233432173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8731316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGC CGATGGCTAC ACTCAGCGCT
  Y
  TCATACTTCC ATTACCTGCT TCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320647892	CHEV_3_8666256	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233432173					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8731316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12961	CpG island 12961	1135 bp distal
Cpgi12962	CpG island 12962	259 bp proximal
Gm64520	predicted gene, 64520	275 bp upstream
Hey1	hairy/enhancer-of-split related with YRPW motif 1	Intron
Rr573305	regulatory region 573305	1547 bp distal
Rr573306	regulatory region 573306	within coordinates
Rr573307	regulatory region 573307	888 bp proximal
Rr573308	regulatory region 573308	990 bp proximal
Tssr32550	transcription start site region 32550	457 bp upstream
Tssr32551	transcription start site region 32551	577 bp downstream
Tssr32552	transcription start site region 32552	707 bp downstream
Tssr32553	transcription start site region 32553	741 bp downstream
Tssr32554	transcription start site region 32554	777 bp downstream
Tssr32555	transcription start site region 32555	793 bp downstream
Tssr32556	transcription start site region 32556	1021 bp downstream