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rs233444958 SNP Detail
Summary
  • ID
    rs233444958
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr15:76132898 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCATTTTCAC TTTTGTTGGG
GAGGTGAAGG GCTTTGTCCG GGAGAATGTC TGGACCTACT ATGTCTCCTA CGCCATCTTC
TTCATCTCCC TCATTGTTCT CAGCTGTTGT GGGGACTTCC GGCGAAAGCA TCCCTGGAAC
CTTGTTGCTC TGGTAACTCT CAATCCCTGA GCCCAGTTCA CCTAGGCCTG TGGGACAGGA
M
AGGGAGGTTG GACAGGGTTG GACCAAGAGC AGCTCCCCAC ACCCAAGGCC CCCCCTGTGA
TCCTCTTCCG CAGTCGATCC TGACCGTCAG CTTGTCCTAC ATGGTGGGCA TGATAGCCAG
CTTTTACAAC ACGGAGGCAG TCATCATGGC CGTGGGCATC ACCACAGCTG TCTGCTTCAC
GGTGGTCATC TTCTCCATGC                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss394611515 MGP_WTSI_15_76079128 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C A A C C C C C C A C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233444958 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C A A C C C C C C A C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss394611515 MGP_WTSI_15_76079128 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:76132898 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi7222 CpG island 7222 988 bp distal
Grina glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) within coordinates
Mir6953 microRNA 6953 440 bp downstream
Tssr131720 transcription start site region 131720 1892 bp downstream
Tssr131721 transcription start site region 131721 1867 bp downstream
Tssr131722 transcription start site region 131722 1842 bp downstream
Tssr131723 transcription start site region 131723 1675 bp downstream
Tssr131724 transcription start site region 131724 1290 bp downstream
Tssr131725 transcription start site region 131725 1157 bp downstream
Tssr131726 transcription start site region 131726 1089 bp downstream
Tssr131727 transcription start site region 131727 1022 bp downstream
Tssr131728 transcription start site region 131728 1003 bp downstream
Tssr131729 transcription start site region 131729 862 bp downstream
Tssr131730 transcription start site region 131730 842 bp downstream
Tssr131731 transcription start site region 131731 775 bp downstream
Tssr131732 transcription start site region 131732 745 bp downstream
Tssr131733 transcription start site region 131733 709 bp downstream
Tssr131734 transcription start site region 131734 680 bp downstream
Tssr131735 transcription start site region 131735 626 bp downstream
Tssr131736 transcription start site region 131736 556 bp downstream
Tssr131737 transcription start site region 131737 400 bp downstream
Tssr131738 transcription start site region 131738 226 bp downstream
Tssr131739 transcription start site region 131739 200 bp downstream
Tssr131740 transcription start site region 131740 135 bp downstream
Tssr131741 transcription start site region 131741 74 bp downstream
Tssr131742 transcription start site region 131742 101 bp upstream
Tssr131743 transcription start site region 131743 118 bp upstream
Tssr131744 transcription start site region 131744 145 bp upstream
Tssr131745 transcription start site region 131745 278 bp upstream
Tssr131746 transcription start site region 131746 320 bp upstream
Tssr131747 transcription start site region 131747 378 bp upstream
Tssr131748 transcription start site region 131748 539 bp upstream
Tssr131749 transcription start site region 131749 569 bp upstream
Tssr131750 transcription start site region 131750 776 bp upstream
Tssr131751 transcription start site region 131751 848 bp upstream
Tssr134960 transcription start site region 134960 1037 bp upstream
Tssr134961 transcription start site region 134961 650 bp upstream
Tssr134962 transcription start site region 134962 525 bp upstream
Tssr134963 transcription start site region 134963 611 bp downstream
Tssr134964 transcription start site region 134964 661 bp downstream
Tssr134965 transcription start site region 134965 693 bp downstream
Tssr134966 transcription start site region 134966 807 bp downstream
Tssr134967 transcription start site region 134967 1203 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory