rs233448835 SNP Detail

Summary

• ID
  rs233448835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35965419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTACTTC GACTGTGACT
  GCATGGTGTT GATTTAGCCG TTCCTTAGAT GAGAGTCAAG CTGGAGCTTG TTGTTGGGGG
  GGGGGGCGGG TAGCGACGCG CTCTGCAGCT GTCGCCCCCC TCAGAACGGA AATTGTCCTC
  CTTAGGGAGG AGGGAAGGGT GACAGTTTGA TTTTTTTTTT TTTTTTGCCC CGGGGAGGGG
  Y
  GGGAACAGCT GACGGAGGTT GGCCTCTGGG TTACTCTGTA GTCCTGGTAA GCACTATAGG
  TGCCTCCCCT TCATCCTGGC AGGAGCTGGA TTCTCTAGGA GAAGCACTTA GCTAAAGGGG
  CTGCAGAAGC TAGGCCCTTG GCTAGCTGGC TTGTTAGTGC CTTATTTATG TGTGTGTTTG
  GGCCCGGTTT CCCAGCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400266055	MGP_WTSI_18_35992020	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233448835					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400266055	MGP_WTSI_18_35992020	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35965419 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9844	CpG island 9844	1170 bp distal
Cpgi9845	CpG island 9845	871 bp distal
Cpgi9846	CpG island 9846	60 bp distal
Cxxc5	CXXC finger 5	within coordinates
Gm29417	predicted gene 29417	1273 bp upstream
Gm50371	predicted gene, 50371	within coordinates
Rr352723	regulatory region 352723	within coordinates
Rr370361	regulatory region 370361	within coordinates
Tssr150576	transcription start site region 150576	1393 bp downstream