rs233460740 SNP Detail

Summary

• ID
  rs233460740
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135762707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAAAAATA ACTTGTAAAT TCCCGGAGAT
  TCTAGACTGA GATACAATGC AAAAGCTGGG TGGGACTTTG GTGGGCTAGG GTGGTAAGGG
  GAAGCATTCT GTTTGGCTCT TTATGAGGTC AGTCTGGCTT CTGCACCCAT CATCCCTCTG
  M
  GTCTTCTCCC TCCCTTTCCC AAGCCCCCCA GATTTCCTGA GCCCCCCCTT TCATGGGATG
  TTATTACCCT CAGCCCCCAC CCCCCAGCCC CACCCCCTGC CTGTGGCTCT GCCTGTCCTG
  CTGCCGACCT GCTGGCAGCA TGGAGACACA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319993816	CHEV_1_137731546	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233460740					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135762707 () rs orientation: forward

Symbol	Name	Function Class
Lad1	ladinin	1628 bp downstream
Rr419292	regulatory region 419292	106 bp distal
Rr419293	regulatory region 419293	542 bp distal
Rr419294	regulatory region 419294	895 bp proximal
Rr419295	regulatory region 419295	1455 bp proximal
Rr419296	regulatory region 419296	1923 bp proximal
Tnnt2	troponin T2, cardiac	1385 bp upstream
Tssr9005	transcription start site region 9005	1411 bp upstream