rs233461316 SNP Detail

Summary

• ID
  rs233461316
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:45007069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCCCAG CGGGGCGGCC
  AGCTGAGGAT TTTATTTTCC TATTTTATTT GAAGTAAAGG CTTCATCTCG GCTTTGGGGG
  TGTTTGCCAA CGTCTCTACT GACAGGAACC AGCAAACTTC AGGACTCAAA TGAGCATCTT
  AATTTATTGA TGCAAAGCAG GTCTGCTCAC AGATCCCCCA TCCCCGGCGC TCTCCCCCCC
  A
  CCCCCCCACC CCCGCGAACT TCGCTCCCTC TGTCGGTCCC GGAGCACGTG GGGGGGGGGG
  GAATCGGCGG CCCGCACCCC CCTGCAACAC CCGACCCCGC CCTGGTACCG CGCGACCCCC
  GCCCCGCTCC CGGTCAGCTG ACCTGGCTCG CCGGCCTGCT CCCCGCCCGC CGCCCTGTTT
  CCGGTCCCCC GGGTCCGCGA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	NOD/ShiLtJ	NZO/HlLtJ	PWK/PhJ	RF/J	SEA/GnJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss353808088	MGP_WTSI_2_44972577	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	NOD/ShiLtJ	NZO/HlLtJ	PWK/PhJ	RF/J	SEA/GnJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs233461316					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353808088	MGP_WTSI_2_44972577	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:45007069 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11634	CpG island 11634			within coordinates
Gm28643	predicted gene 28643			1148 bp upstream
Rr373117	regulatory region 373117			within coordinates
Rr556444	regulatory region 556444			within coordinates
Rr556445	regulatory region 556445			328 bp proximal
Tssr17636	transcription start site region 17636			174 bp upstream
Tssr23988	transcription start site region 23988			59 bp upstream
Tssr23989	transcription start site region 23989			244 bp downstream
Tssr23990	transcription start site region 23990			292 bp downstream
Tssr23991	transcription start site region 23991			343 bp downstream
Tssr23992	transcription start site region 23992			369 bp downstream
Tssr23993	transcription start site region 23993			466 bp downstream
Zeb2	zinc finger E-box binding homeobox 2			Intron
				Noncoding-Transcript-Variant