rs233462196 SNP Detail

Summary

• ID
  rs233462196
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88889778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGGGGGGT GTCAATTTTG TGCAGTCTTA
  ACCAGGGTTT TAGTAATTGT GTTTAGGTCT CATATTCTGT TGTACAGCCA TCTCCCCAAC
  CCtattttta gatgttgaga cggccactaa ctctctagcc cggtctgaca tcgaactcac
  R
  gcaatcctgt tgcctcagcc tcctaagtga ctaaattacg ggcacgagcc accaagctcT
  GGGTCAACAG TATTTTGTTC TGTTTGGCTT TGAGTTTTAA TAAGACCGGT CCTGTTCTGG
  AGGGATGATT GGTGACACCT CGGGGACACA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323783680	CHEV_11_88860266	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233462196					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88889778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	145 bp proximal
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	651 bp downstream
Rr402858	regulatory region 402858	313 bp upstream
Trim25	tripartite motif-containing 25	424 bp upstream
Tssr104062	transcription start site region 104062	433 bp upstream
Tssr104063	transcription start site region 104063	490 bp upstream