rs233462616 SNP Detail

Summary

• ID
  rs233462616
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:38298698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTATCA GATTTATTAA
  ACACAATGCT TTTCTGTACC ATAAGGGACC AGACAGGCAT AAAATATGTT CTTGGGATAT
  GCAAAAACAA ACAAACAAAA AACCCCGAGT ACAAGTTGGT TTTAATTTAA TTAAAACATG
  ATTTGATAAC CGATCATGCT CTGTGTGCAA CACCTTCGAC CTAATGTCTC ACATTAAAAG
  W
  TCCATGACCT GAATTTCAAA AGAATCACCA ACCATCTCTA CTTTCCTCTT AAAAAGAACT
  TCCAAATTCT TCTGGTTAAA GTAGAGGTTG CAAAAATTAT GAAAAGCCTC ATAAAGTGGG
  GGAGCCTGGA ATATAAGGCT CCAGGCCAAC TCTGGCTATA TAACTAGTTC AGGGCCAGCC
  TGAACTCATA AAGACAAAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393693040	MGP_WTSI_15_38228209	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233462616					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393693040	MGP_WTSI_15_38228209	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:38298698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7049	CpG island 7049	419 bp proximal
Gm35248	predicted gene, 35248	547 bp upstream
Klf10	Kruppel-like transcription factor 10	within coordinates
Rr501354	regulatory region 501354	989 bp distal
Rr501355	regulatory region 501355	52 bp proximal
Rr501356	regulatory region 501356	618 bp proximal
Tssr4579	transcription start site region 4579	1831 bp upstream
Tssr131113	transcription start site region 131113	903 bp upstream
Tssr131114	transcription start site region 131114	1054 bp upstream
Tssr131115	transcription start site region 131115	1938 bp upstream
Tssr134124	transcription start site region 134124	1236 bp downstream