rs233463622 SNP Detail

Summary

• ID
  rs233463622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36555020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCCTGA CTTTTATCTT
  CTTCCTCTTT GCCTATTTAC ACCCCCTGTT CCTATCTGCC ACTGTCACAT CCTCTGCTTG
  GAAGACAGCT CCTGGACCAG TCCCTTCCCA AGCCCCAGTC AGTCTCCCAG AAACCCCCCC
  TAGATTGCAT AAGATGCTTT TGAGTCTTGT GACACTTTCT GACTACCACA AGCCAATCTG
  Y
  ATCGATGTAG CTCATGAGTC TTGGGTTTGC TAACAAAGGG ACTTGGAAAG GTGGGCCAGA
  TAAGACCGTG TTAGAACTAG AAGCTGTACA AAGCACACTT GTCCCAGTTG ACTCTACTCT
  GGGATAGGTC TGAGGGCTCT GAGCGCAAGA GGCTAGAGGA AGGCTATTAC TCTGCAACTG
  GTCATTATGG TCTTGTTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324923056	CHEV_15_36484630	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233463622					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36555020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7030	CpG island 7030	444 bp proximal
Rr311658	regulatory region 311658	381 bp proximal
Snx31	sorting nexin 31	within coordinates
Tssr134019	transcription start site region 134019	438 bp downstream
Tssr134020	transcription start site region 134020	661 bp downstream
Tssr134021	transcription start site region 134021	681 bp downstream
Tssr134022	transcription start site region 134022	711 bp downstream