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rs233470680 SNP Detail
Summary
  • ID
    rs233470680
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:44498187 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGTTTTCCCC AGGGGCGGGG
    TCTAGAGCCC CTGACTGACA AGCGGAGATG GGGCGTGGCG AGTCTACAGT CCCGCCTCGC
    ACCCCAGATG GGCGTGCGTT TTCCAGGGGG CGGGGCTAAG GGAGGCTCTC CCTAAGGACT
    GCGGAGAGTG ACAACAGCAT CGTAACTAGA AGCTGGTGCT TGCTAAGTTG ACTCGGCCTA
    R
    TCCCTGCACA GCAGAAGGTG GAAGCGGACC ATCAGTGGGG GGCGTCTCCT GTAGATGAGC
    GAGGGAATGA TTTCCAAAGT CTTACCCTGT AGCTGGATCC TTCCATTGCC GCCGCGGAGG
    TTCCACTGCC CCTATCTCCT CCTTTTCCGG GTCAACTTGG TGTCATATCC GGAAAAATAA
    CGCTCCCTTC CAGGCTAGAT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371164905 MGP_WTSI_7_52104133 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233470680 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss371164905 MGP_WTSI_7_52104133 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44498187 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Akt1s1 AKT1 substrate 1 461 bp upstream
Cpgi18996 CpG island 18996 within coordinates
Mir707 microRNA 707 936 bp upstream
Rr167667 regulatory region 167667 within coordinates
Tbc1d17 TBC1 domain family, member 17 within coordinates
Tssr66435 transcription start site region 66435 331 bp upstream
Tssr66436 transcription start site region 66436 453 bp upstream
Tssr66437 transcription start site region 66437 819 bp upstream
Tssr66438 transcription start site region 66438 1186 bp upstream
Tssr66439 transcription start site region 66439 1601 bp upstream
Tssr66440 transcription start site region 66440 1630 bp upstream
Tssr72235 transcription start site region 72235 195 bp upstream
Tssr72236 transcription start site region 72236 118 bp downstream
Tssr72237 transcription start site region 72237 1089 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory