rs233475566 SNP Detail

Summary

• ID
  rs233475566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131646664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGGGTT CTACCTGGGA
  AAGGGACCTG TAGTCACCAC CCCCCTCACA GCTCAGCCCA ATGCCTGAGG CAGTAGTCAG
  AGGACAGGCA GGCTGATGTC GAGCACTTTG CTCCAGGTGT TCAACATGTG TGCGAGCATT
  TCAGCTCTGA GAACACACTG TGGTGCTATT TGTTCTTATA AAGATAGGGA AACTGAGCCC
  Y
  GGTGAGCTTA GGTGTGCTCT CCTCTCCCAC CCATCTCCTT CCTTCCTCCT CCCGGGCCCA
  GGGTGGAGGA GAGGAGGGGG GTGAAGGAAG TCATAGGCCT CACGTATATA TGTCTCTCTA
  GCATGGAGGG CCAGCTAGGG CACACATTCC CTTGAGCACA AGGCTCTAGA AAGGAGCAAG
  TCAGAACCAG CCTTGGGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321329093	CHEV_4_131475268	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233475566					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131646664 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14947	CpG island 14947	358 bp proximal
Gm12992	predicted gene 12992	within coordinates
Gm50475	predicted gene, 50475	1463 bp downstream
Rr85751	regulatory region 85751	1464 bp distal
Rr100128	regulatory region 100128	within coordinates
Tmem200b	transmembrane protein 200B	1847 bp upstream
Tssr39357	transcription start site region 39357	1215 bp upstream
Tssr39358	transcription start site region 39358	1797 bp upstream
Tssr39359	transcription start site region 39359	1845 bp upstream
Tssr43616	transcription start site region 43616	1349 bp downstream
Tssr43617	transcription start site region 43617	1666 bp downstream