rs233476592 SNP Detail

Summary

• ID
  rs233476592
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110975679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGTGGGC AGAGGCTGAG
  GATGTTGCTA AACTTGCAGT GCACAGCAAA AGCATGCTTA GCAGGGATGC GGCTGAGAGC
  CCTGATGATA GACTCTCATG CATTATGTTT TGGAGCATTA GTCTGTACTA AGAACAGTGG
  GGAAATAGTG AAGGTTTTGT GTAGGAGTGG AATGATCAGA AGGATGGCTT ATTATGGGCT
  R
  GAGATGGTAT CAGAGAAGAG GCATCAGTGG TTTCACGGAG GTGAGTCAGG AGCCACAGGG
  GTGGGGTGGG TGGAATGGGG AGGGAAGTAG TTGGTGCTTT GAGTGGCTAT GGATAGGTGG
  CGGAGACAGG ACCCGGGAGA ATACATCTGG ATAGATGGTA GGGAGAGTCA GAATTGGGGA
  GGGGGAAGGC ATGGTTGCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323195924	CHEV_9_111049115	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233476592					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110975679 () rs orientation: forward

Symbol	Name	Function Class
Lrrfip2	leucine rich repeat (in FLII) interacting protein 2	within coordinates
Rr687307	regulatory region 687307	1572 bp distal
Tssr87483	transcription start site region 87483	84 bp upstream
Tssr87484	transcription start site region 87484	1422 bp upstream