rs233489446 SNP Detail

Summary

• ID
  rs233489446
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127585759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGATATTT GAACAGATCT
  TCCTGTACCT GGTGTGCCCT GAGAAATCTC TCTTCTCCTG GCCCTTTGGT TCCCCTTCCC
  AAGACAAACA TGGTTACTAC TGCAGTCTGT TGGCCTTCTG TGTATTTGGT ATTTAAAACT
  AGCAGAATTA AAAAAACTTT TGTTGAGCCT CTACACACCA GTGGCTTAAA AACCAACCAA
  M
  CAAACAAACA AAAAACAACT ACTACTCTTA AATTTGTTAT GTTAATTATT CATTTCTGTT
  TTTCTACTGA ATACTGAAGT GCCAAGGGTT CAAGCTACTT TGTAGAAGGT CCTTGGGCCT
  CTGGAAGTTA ACAGATTAGT TATCTGCCTT CTCCACTCTC CAACCAACCA GCAGACTTGC
  CAGTGAATGG TAGGCCTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359647273	MGP_WTSI_3_127495028	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	A	A	C	C	A	A	C	C	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	C	A	C	A	A	C	A	C	A	A	A	A	C	C	A	C	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233489446					SNP	C	C	C	C	A	A	C	C	A	A	C	C	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	C	A	C	A	A	C	A	C	A	A	A	A	C	C	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359647273	MGP_WTSI_3_127495028	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127585759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	1982 bp distal
Cpgi13801	CpG island 13801	1161 bp distal
Gm56817	predicted gene, 56817	1853 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr398007	regulatory region 398007	1427 bp upstream
Rr584862	regulatory region 584862	1864 bp distal
Rr584863	regulatory region 584863	1296 bp distal
Rr584864	regulatory region 584864	within coordinates
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31604	transcription start site region 31604	1985 bp downstream
Tssr31605	transcription start site region 31605	1471 bp downstream
Tssr31606	transcription start site region 31606	1285 bp downstream
Tssr31607	transcription start site region 31607	1061 bp downstream
Tssr31608	transcription start site region 31608	965 bp downstream
Tssr31609	transcription start site region 31609	926 bp downstream
Tssr31610	transcription start site region 31610	833 bp downstream
Tssr31611	transcription start site region 31611	720 bp downstream
Tssr35602	transcription start site region 35602	1892 bp upstream