rs233494189 SNP Detail

Summary

• ID
  rs233494189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:23894250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGAAAGG GATGAAGTCC
  TTCTGCAAAC CTGGCCACCA GGACCTTCCC TCTGACAAGA GGACACTAGC TCGGTGGAAC
  CCTCAGTGAA AGGCAGCCTG GGAAAGGGAA AATGTTACCC CATTAGTGAA TAAAGACCTG
  TGAGCAGTTG AAGATTTCTC AGCAGCCTTT GGGGAGGGTG GGGTACTGGA TGCTGGGGTT
  Y
  CCTCCTCAAA ATCTTCCCTG GAAAATCGGT GAGGGCAAGC CAGGTCCTGG CAGGCTGAGC
  TCCAGGCATT GAGAATGTGT GAGTCACAGC CTCACCCCCG CCCCCGCAGT GGCCGACTGG
  CTCCCTCCCT CCAGTTCTGG GGAGTCAAGT TAGGGATCAG GCCATATCTT AAAGTTAAAG
  ATTCTTTTAT TAATAAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397840175	MGP_WTSI_17_23812243	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233494189					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397840175	MGP_WTSI_17_23812243	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23894250 () rs orientation: forward

Symbol	Name	Function Class
Hcfc1r1	host cell factor C1 regulator 1 (XPO1-dependent)	mRNA-UTR
Rr405075	regulatory region 405075	1531 bp downstream
Rr523101	regulatory region 523101	1639 bp distal
Rr523102	regulatory region 523102	1712 bp distal
Rr523103	regulatory region 523103	1445 bp distal
Rr523104	regulatory region 523104	904 bp distal
Rr523105	regulatory region 523105	606 bp proximal
Rr523106	regulatory region 523106	988 bp proximal
Thoc6	THO complex 6	1394 bp upstream
Tnfrsf12a	tumor necrosis factor receptor superfamily, member 12a	169 bp downstream
Tssr142940	transcription start site region 142940	1624 bp downstream
Tssr142941	transcription start site region 142941	1289 bp downstream
Tssr142942	transcription start site region 142942	1275 bp downstream
Tssr146635	transcription start site region 146635	1699 bp upstream
Tssr146636	transcription start site region 146636	1389 bp upstream
Tssr146637	transcription start site region 146637	172 bp upstream
Tssr146638	transcription start site region 146638	575 bp downstream
Tssr146639	transcription start site region 146639	1286 bp downstream
Tssr146640	transcription start site region 146640	1311 bp downstream
Tssr146641	transcription start site region 146641	1365 bp downstream
Tssr146642	transcription start site region 146642	1384 bp downstream